Chemical molecule structure visualization
The All-in-One Chemistry Platform — No More Tool-Hopping

Your Chemistry.
One Workspace.
Zero Silent Failures.

Convert, validate, and visualize IUPAC names, SMILES, InChI codes, and MOL/SDF files — all in one clean platform. Stop juggling ChemDraw, PubChem, and brittle Python scripts. Get results in seconds.

12+Supported Formats
3-in-1Convert · Validate · Visualize
99.9%Uptime SLA
IUPACCompliant Engine
Stop switching between ChemDraw & PubChem & RDKit⬡One platform — convert, validate, visualize⬡Silent stereochemistry failures — fixed⬡Visual 2D/3D structure previews⬡IUPAC-rigorous validation engine⬡Batch processing for research pipelines⬡No account needed to try it⬡Stop switching between ChemDraw & PubChem & RDKit⬡One platform — convert, validate, visualize⬡Silent stereochemistry failures — fixed⬡Visual 2D/3D structure previews⬡IUPAC-rigorous validation engine⬡Batch processing for research pipelines⬡No account needed to try it⬡

Your chemistry workflow is held together by duct tape

Researchers, developers, and educators are losing hours every week context-switching between incompatible, fragile tools.

Current Workflow5 tools, brittle
ChemDraw
Draw structure manually
PubChem
Cross-check CAS / SMILES
RDKit / Jupyter
Custom Python wrappers
OpenBabel
Format conversion (silent failures)
Downstream Crash
Corrupted SDF, dropped stereocenters
VS
ChemStruct Workflow1 platform, bulletproof
Open ChemStruct
Paste any structure — IUPAC, SMILES, InChI, file
Instant Validation
Atom-level errors surfaced immediately
Visual 2D/3D Preview
Publication-quality renders, right in the workspace
Export & Move On
SDF, MOL, SVG, PNG — one click. Stereochemistry intact.

Everything your chemistry workflow
ever needed in one place

Built from ground-up research with 12 chemistry professionals across academia, industry, and software engineering. Designed as a workspace first — with a powerful API for those who need it.

Clean Visual Workspace

A dedicated chemistry workspace that replaces ChemDraw for everyday tasks. Paste or type any structure, get instant visual feedback, and export with a click — no scripting required.

Paste & Go2D Preview3D Viewer1-Click ExportHistoryCollaboration+ Team Sharing

Atom-Level Validation

Pinpoint valency violations, impossible stereocenters, and malformed representations with exact error codes — not "invalid input".

ERR_VALENCE_C4: Carbon atom 4 has valence 5
WARN_STEREO: Ambiguous R/S at chiral center 2

2D/3D Structure Visualization

Instant, publication-quality PNG/SVG renders of any structure in your workspace. Export for papers, presentations, or reports — zero rendering setup needed.

High-Throughput Batch Processing

Upload a CSV or SDF of thousands of structures and process them in one go. Perfect for data cleaning, pipeline prep, and LIMS ingestion — all without writing a script.

Structure Standardization

Automated tautomer enumeration, salt stripping, stereochemistry normalization, and charge neutralization before any conversion.

Also available as an API & SDK

Every capability in the platform is exposed via a deterministic REST/GraphQL API. Drop Python or JS SDKs directly into Jupyter, LIMS, or your own pipelines. Full OpenAPI/Swagger docs included.

from chemstruct import Client

client = Client("cs_live_your_key")

result = client.convert(
    input="2-methylpropan-1-ol",
    from_format="iupac",
    to_format="smiles",
    render=True
)

# result.smiles → "CC(C)CO"
# result.image_svg → "<svg ...>"

Comprehensive Exports

Export to SDF, MOL, CSV, SMILES, InChI, high-quality PNG, and publication-ready SVG. Everything you need for papers, reports, or downstream pipelines — in one click.

IP-Safe by Design

Your molecules are never stored, logged, or used for training. Zero-retention processing with SOC 2 Type II compliance and enterprise SSO.

From messy structure to clean, verified result in seconds

01

Paste or Upload Your Structure

Type a common name, paste a SMILES string, drop in a corrupted SDF file — ChemStruct handles real-world, imperfect inputs without complaint. No preprocessing needed.

IUPAC · SMILES · InChI · MOL · SDF · CML
Input: "2-methylpropan-1-ol"
Format: IUPAC Name
Convert to: SMILES + SVG render
02

Instant IUPAC-Rigorous Validation

The platform checks valency, stereochemistry, tautomers, and ring structures automatically — flagging exact issues with atom-level detail. No LLM guesswork involved.

Valency · Stereocenters · Ring Validation · Salt Stripping
✓ Molecular formula valid
✓ All valences satisfied
✓ Stereochemistry unambiguous
⚠ Tautomer normalized (keto form)
03

Preview, Convert & Export

See a live 2D/3D render in your workspace, pick your output format, and export in one click — PNG, SVG, SDF, MOL, SMILES, InChI, all with stereochemistry intact.

2D Render · 3D Viewer · SVG · PNG · SDF · MOL
ConvertedSMILES: CC(C)CO
Rendered2D SVG preview ✓
ValidationAll checks passed ✓
ExportSDF · MOL · PNG · SVG

See ChemStruct in action

No account needed. Enter any chemical name or string below and see exactly what ChemStruct returns — instantly.

Your Input
ResultReady

Click "Convert Structure" to see your result

A chemistry workspace built for how scientists actually work

ChemStruct is a full-featured web platform — not a wrapper around an API. Researchers, educators, and students get a polished visual workspace. Developers get a powerful API on top of that.

ChemStruct chemistry workspace showing molecule conversion, validation, and 2D structure preview

Designed from real user pain

Quotes and insights from 12 researchers, educators, and developers surveyed during our discovery phase.

“

"Switching between 4–5 individual websites completely breaks user momentum and productivity. We need a centralized hubthat handles it all."

MC
Medicinal Chemist
Pharmaceutical Industry · Expert
“

"High-throughput REST/GraphQL APIs with robust documentation are completely absent from existing web tools. I end up writing my own microservices."

FE
Full-Stack Developer
AI/Chemistry Integration · Advanced
“

"ChemDraw is expensive, un-scriptable, and locks our data in a proprietary ecosystem. We need an open, scriptable platform that works in the browser and in our pipelines."

PR
Professor
Computational Chemistry · Expert
“

"Students are using ChatGPT to parse IUPAC names and then manually verifying. They need instant, trustworthy structure previewin a single tool."

CE
Chemistry Educator
University · Advanced
“

"We need clear IP transparency. If I upload a novel compound, I must know exactly what happens to that moleculeon the platform's servers."

RS
Research Scientist
Drug Discovery · Expert

Simple pricing for every workflow

Free to start. Scale as you grow. No hidden fees, no lock-in, no proprietary ecosystems.

MonthlyAnnual Save 25%
Free
$0/month

Perfect for students, hobbyists, and proof-of-concept exploration.

  • ✓ 500 conversions/day
  • ✓ All format conversions
  • ✓ 2D structure rendering
  • ✓ Basic validation reports
  • ✗ Batch file processing
  • ✗ 3D rendering
  • ✗ Priority support
Get Started Free
Team
$49/seat/month

For computational chemistry teams and corporate labs with shared workspaces.

  • ✓ Unlimited conversions
  • ✓ All Pro features
  • ✓ Shared team workspace
  • ✓ Batch processing (50k/run)
  • ✓ LIMS integration support
  • ✓ 99.9% uptime SLA
  • ✓ Priority email support
Start Team Trial
Enterprise
Custom

For universities, pharmaceutical companies, and institutional deployments.

  • ✓ Everything in Team
  • ✓ On-premise deployment
  • ✓ SSO / SAML 2.0
  • ✓ SOC 2 Type II
  • ✓ Dedicated infrastructure
  • ✓ Custom SLA
  • ✓ White-glove onboarding
Contact Sales
Building a pipeline? We also offer transparent API pay-per-use billing for developers integrating ChemStruct into their own tools. View developer pricing →

Trusted by researchers at

ChemStruct Logo

One platform. Done.

Join researchers, educators, and developers who replaced their fragmented cheminformatics toolchain with a single, bulletproof platform.